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Figure 1 | BMC Bioinformatics

Figure 1

From: Generating quantitative models describing the sequence specificity of biological processes with the stabilized matrix method

Figure 1

Input training data. The <TrainingData> element consists of a series of <DataPoints> (2). Each contains a sequence and a measurement value. The characters allowed in <Sequence> are specified in <Alphabet> (1), and the number of characters has to correspond to <SequenceLength> (1). In this example, <Alphabet> and <SequenceLength> specify 8-mer peptides in single letter amino acid code. Each measurement can optionally be associated with a threshold (3) that can either be <Greater> or <Lesser>, signaling that the measurement corresponds to an upper or lower boundary of measurable values.

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BMC Bioinformatics

ISSN: 1471-2105

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