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Table 3 Comparison of PAGE results from data sets produced using different microarray platforms

From: PAGE: Parametric Analysis of Gene Set Enrichment

U95A U133A Agilent
Gene Set Z score p-value Gene Set Z score p-value Gene Set Z score p-value
Complement Activation Classical 3.0477 0.0023 Krebs TCA Cycle 5.0505 4.41E-07 tRNA Synthetases 3.1714 0.0015
Krebs-TCA Cycle 2.6771 0.0074 Cell Cycle 3.4088 0.0007 Krebs TCA Cycle 3.1291 0.0018
Nuclear Receptors 2.6562 0.0079 Translation Factors 2.8213 0.0048 Proteasome Degradation 1.9894 0.0467
Calcium Channels 1.6956 0.0900 Nuclear Receptors 2.3404 0.0193 Glycolysis and Gluconeogenesis 1.5679 0.1169
Apoptosis 1.4085 0.1590 Complement Activation Classical 2.2861 0.0223 Steroid Biosynthesis 1.5109 0.1308
TGF Beta Signaling Pathway -1.8580 0.0632 Matrix Metalloproteinases -2.2837 0.0224 Ribosomal Proteins -2.1275 0.0334
Inflammatory Response Pathway -2.2590 0.0239 TGF Beta Signaling Pathway -3.3762 0.0007 Glycogen Metabolism -2.4904 0.0128
Glycogen Metabolism -2.6981 0.0070 Inflammatory Response Pathway -3.5668 0.0004 TGF Beta Signaling Pathway -2.6910 0.0071
Cholesterol Biosynthesis -4.6988 2.62E-06 Cholesterol Biosynthesis -5.8165 6.01E-09 Cholesterol Biosynthesis -4.1642 3.12E-05
Gap Junction Proteins-Connexins -5.7792 7.51E-09 Gap Junction Proteins-Connexins -6.2689 3.64E-10 Gap Junction Proteins-Connexins -6.6162 3.69E-11