Table 1 Results from GENERATOR with H₂O₂ dataset using five clusters. The table shows the reported classes for five clusters from GENERATOR clustering shown in figure 1. The three over-representation values described in Methods section and figure 5 are reported for each class. Results are also compared to graphical output from SGD GO term finder (figure 8 [see Additional file 3]). Abbreviations in this column are: MF, molecular function; CC, cellular component; BP, biological process. Classes reported as 'missing' were not observed in the SGD GO term finder graphs. A more detailed view of the data is available in table 5 [see Additional file 5]. Classes with S.log(p) < 1 (marked with -) are not included to analysis although they are still shown here.

organellar ribosome

mitochondrial ribosome

mitochondrial matrix

Ribosome

structural constituent of ribosome

RNA ligase activity

tRNA ligase activity

ligase activity, forming aminoacyl-tRNA and related compounds

ligase activity, forming carbon-oxygen bonds

ligase activity, forming phosphoric ester bonds

mitochondrial membrane

inner membrane

mitochondrial inner membrane

Mitochondrion

respiratory chain complex III

transcription regulator activity

nucleobase, nucleoside, nucleotide and nucleic acid metabolism

mediator complex

general RNA polymerase II transcription factor activity

DNA-directed RNA polymerase II, holoenzyme

mitochondrial genome maintenance

mitochondrion organization and biogenesis

mitochondrial chromosome

soluble fraction

helicase activity