High-Throughput GoMiner, an 'industrial-strength' integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies of Common Variable Immune Deficiency (CVID)

Table 1 Clusters Of Categories Derived From The CIM (Figure 3)

Cluster Number	Cluster Name	Category
1	Exogenous Antigen	antigen presentation exogenous antigen
		antigen processing exogenous antigen via MHC class II
2	Xenobiotic	xenobiotic metabolism
		response to xenobiotic stimulus
3a	Signaling	cell surface receptor linked signal transduction
		G-protein coupled receptor protein signaling pathway
4	Homeostasis	calcium ion homostasis
		di-tri-valent inorganic cation homeostasis
		cell ion homeostasis
		cation homeostasis
		metal ion homeostasis
		ion homeostasis
5a	Response	response to chemical substance
		response to abiotic stimulus
3b	Signaling	cell-cell signaling
6	Taxis	taxis
		chemotaxis
5b	Response	cellular defense response
5c	Response	response to stimulus
		response to external stimulus
		organismal physiological process
		immune response
		response to biotic stimulus
		defense response
5d	Response	response to wounding
5e	Response	response to pest pathogen parasite
		response to stress
7	Adhesion	cell adhesion
5f	Response	humoral immune response
		humoral defense mechansim

ISSN: 1471-2105