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Table 3 Number of genes declared to be differentially expressed by each method for the HIV data using 2 and 4 replicates

From: Normal uniform mixture differential gene expression detection for cDNA microarrays

  NUDGE SAM EBarrays GG EBarrays LNN t test Bonferroni t test
All 4 replicates 16 42 24 19 26 12
Replicates 1&3 30 49 23 27 193 83
Replicates 2&4 25 142 19 31 406 164