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Table 3 Number of genes declared to be differentially expressed by each method for the HIV data using 2 and 4 replicates

From: Normal uniform mixture differential gene expression detection for cDNA microarrays

 

NUDGE

SAM

EBarrays GG

EBarrays LNN

t test

Bonferroni t test

All 4 replicates

16

42

24

19

26

12

Replicates 1&3

30

49

23

27

193

83

Replicates 2&4

25

142

19

31

406

164

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BMC Bioinformatics

ISSN: 1471-2105

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