Figure 4

Screen shots from the results page of the InterPare web site. (a) The query box with several options. 'Relative ASA' is a criterion for discerning the interior region of a protein from its surface region. There are two independent criteria for the interface definition: 'ΔASA' for the ASA method, and 'Distance' for the PSIMAP algorithm. (b) Results of querying the database with '1a25' as a PDB ID. 1a25 is a C2 domain from the protein kinase C beta. It consists of two identical domains (d1a25a_ and d1a25b_). Results by the ASA method are shown here. The atomic coordinates for the protein surface (Shell), interior (Core), and interface (Face) regions are downloadable on this page. (c), (d) The 3D structure of protein '1a25' by Chime and Jmol, respectively. Interior regions are blue and surface regions are red. Interface regions are displayed in space-fill model and other non-interface regions are displayed in wireframe with a backbone tracing mode.