Figure 5
From: Sources of variation in Affymetrix microarray experiments
Comparison of two different biological replicates using different image processing techniques. Expression levels detected on the 1 _2A chip (x-axis) are plotted against levels detected on the 6 _1 chip (B) (y-axis). Results obtained with different image processing algorithms are shown. dChip and MAS 5.0 are shown on the log scale for compatibility with RMA and GCRMA-EB. Good agreement between two chips will result in data grouped along the identity line, while lack of agreement will lead to dispersion.