Table 1 Properties of Transfac and Jaspar matrices: We removed matrices for which the sample size was normalized to 100 and no information about the actual number of samples was available, as well as matrices of length below 6 or sample size below 5.
From: Measuring similarities between transcription factor binding sites
Property | Transfac | Jaspar |
|---|---|---|
Number of original matrices | 694 | 108 |
Number of matrices after filtering | 637 | 103 |
Min length | 6 | 6 |
Max length | 30 | 30 |
Median length | 12 | 11 |
Min sample size | 5 | 6 |
Max sample size | 389 | 389 |
Median sample size | 18 | 23 |
Min information content | 3.6 | 5.7 |
Max information content | 44.3 | 26.2 |
Median information content | 12.8 | 11.6 |