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Table 2 Splice sites in known and novel ASPIC-predicted introns

From: ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences

Splice Site

Known introns

Novel introns

 

N

%

N

%

GT-AG

897

98.14

57

60.64

GC-AG

8

0.77

15

15.96

GT-other

3

0.33

5

5.10

other-AG

4

0.44

13

13.27

other-other

3

0.33

4

4.08

Total

915

 

94

 
  1. Number (N) and percentage (%) of splice site types in known and novel ASPIC-predicted introns.
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BMC Bioinformatics

ISSN: 1471-2105

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