Skip to main content

Table 2 The new parameter set for linear prediction

From: Prediction of β-barrel membrane proteins by searching for restricted domains

Parameter

olda

newb

newc

newd

aa

-

>79

TMHMM

<1

<2

BSN

>13

>10

BSN/aa

-

>0.026

BBS275

-

>2.5

>1.35

>1.35

BSHS225

-

>0.12

>0.11

>0.04

BBS

>0.7

-

-

-

  1. Shown are the parameters used in here for linear prediction (new). They are compared to previously used parameters (old). a ...values as previously described [15], b ...values for a prediction with 0% false positive rate (BBS275 OR BSHS225), c ...values for prediction with lowest false prediction rate considering independent selection by BBS275 and BSHS225 (OR), d ...values for prediction with lowest false prediction rate considering dependent selection by BBS275 and BSHS225 (AND).