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Table 1 Data description. In this table, the array data of this study are summarized.

From: A stepwise framework for the normalization of array CGH data

Array Reference DNA Sample DNA Data type for normalization performance evaluation Evaluation method
MM-1 to MM-4 Male genomic Male genomic Self-self hybridizations S.d. for each array
H526-1 to H526-8 H526 cell line Male genomic Replicate H526 cell line experiments 1. Correlation coefficient for each pair of arrays
2. ICC
3. S.d. for each spot
MF-1 and MF-2 Female genomic Male genomic Single copy change T-test
T1 to T5 Female genomic Male/Female mixture (see Additional file 1) Single copy loss with normal cell contamination T-test
T6 to T10 Male genomic Male/Female mixture (see Additional file 1) Single copy gain with normal cell contamination T-test
X1 to X5 Female DNA cell lines containing varying numbers of X chromosomes (see Additional file 2) varying levels of gene amplification and deletion for each of the X-chromosomal genes T-test