Figure 6
From: Multiple sequence alignment accuracy and evolutionary distance estimation
Observed transitional and transversional sites in the alignments. Percent of observed and correct transitional and transversional sites in the true, pair wise, and multiple sequence alignments. (A) Transversions for d = 0.5; (B) Transitions for d = 0.5; (C) Transversions for d = 1.0; (D) Transitions for d = 1.0. Lengths of branches x and branch y are illustrated in Figure 8. All points are averages of 1,000 simulation replicates.