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Table 1 Motif members of four seed genes.

From: Genetic interaction motif finding by expectation maximization – a novel statistical model for inferring gene modules from synthetic lethality

Seed

Motif members

 

p = 0.6

p = 0.7

p = 0.8

p = 0.95

ARL1

ARL3, SWF1, RIC1, YPT6

RIC1, YPT6, ARL3

SKT5

CHS6, CHS3, CHS7, CHS5

CHS3, CHS7, CHS5

CHS3, CHS5

CTF8

CTF4, CTF18, DCC1, BIM1, CIN8, KAR3

CTF4, CTF18 DCC1, BIM1

CTF4, CTF18, DCC1

CTF4, CTF18, DCC1

RIC1

YPT6

  1. Motif members of ARL1, SKT5, CTF8 and RIC1 are obtained by choosing different values of initialization parameter p. Most motifs show little dependency on p for p ≥ 0.9.
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BMC Bioinformatics

ISSN: 1471-2105

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