Figure 2

EcoSNP-VISTA screenshot of scaffold 1 of the microbial genome of ferroplasma II [6]. A. SNPs are represented as an array of reads (rows) × polymorphic sites (columns), where each cell is colored based on the nucleotide. Red is used for nucleotide T (Thyamine), blue is used for nucleotide A (Adenine), yellow is used for nucleotide C (Cytosine), and green is used for nucleotide G (Guanine). B. Coordinate bar providing global view of recombination points shown with blue lines and frequency of SNPs, where black indicates higher frequency. C. Array representation showing exact position of the recombination point with two black triangles. D. Window displaying the BLAST alignment for the selected region.