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Figure 8 | BMC Bioinformatics

Figure 8

From: An algorithm for automatic evaluation of the spot quality in two-color DNA microarray experiments

Figure 8

Quality plots ( Q k versus V k ) using replicated arrays. Black dots – three replicated images (insets) are combined without normalization and the default quality weights are used; red dots – three replicated images (insets) are combined after the global normalization; blue dots – triplicate spots from the first array are used. The solid lines represent the exponential ideal quality curves f(V k ) (Eq. (6),a): Red line (for the red dots) – V ¯ MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacuWGwbGvgaqeaaaa@2DF9@ ≈ 0.125; Blue line (for the blue dots) – V ¯ MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacuWGwbGvgaqeaaaa@2DF9@ ≈ 0.08.

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