Gene capture prediction and overlap estimation in EST sequencing from one or multiple libraries

BMC Bioinformatics

Table 2 Number of expressed genes in four cDNA libraries of Arabidopsis thaliana. This table lists the gene cluster profile data (n_j), EST sample size(EST.total), observed gene number (Gene.obsvd), estimated total number of expressed genes (Gene.estd) and 95% confidence interval (95% C.I.) for 4 EST sets including Silique, ABGR, Root, Flower bud; and 2 pooled sets including ABGR + Root (A+R), Silique + Flower bud (S+F).

n _j	Silique	ABGR	Root	Flower bud	A+R	S+F
n ₁	2963	1969	2187	1801	3333	3749
n ₂	994	459	490	367	951	1270
n ₃	440	182	133	140	312	566
n ₄	222	69	121	69	211	295
n ₅	124	58	37	40	122	182
n ₆	73	28	51	25	66	109
n ₇	59	17	22	22	40	80
n ₈	42	20	19	10	35	49
n ₉	27	7	7	15	29	48
n ₁₀	19	19	8	12	25	33
$n_{11}^{+}$	130	55	51	63	119	214
EST.total	12330	5812	5891	5503	11529	17784
Gene.obsvd	5093	2883	3126	2564	5243	6595
Gene.estd	12005	9492	9155	9232	12720	15333
95% C.I.	(11137,15300)	(7823,11585)	(8160,11444)	(7780,11381)	(11987,15579)	(13202,17400)

ISSN: 1471-2105