Table 2 CoPub Mapper test groups. Eight groups of genes with a common function, process, cellular location, or microarray expression profile, were defined from gene ontology (GO), BioCarta, or a microarray experiment. The genes used for CoPub Mapper analysis were randomly selected from larger sets of genes part of the 8 different groups.
From: CoPub Mapper: mining MEDLINE based on search term co-publication
Test groups | # Genes | Source |
|---|---|---|
smooth muscle contraction | 12 | GO (Biological Process) |
acetyltransferase | 18 | GO (Molecular Function) |
nuclear pore | 15 | GO (Cellular Component) |
nucleosome | 17 | GO (Cellular Component) |
ubiquitin | 24 | GO (Molecular Function) |
hypoxia | 26 | GO (Biological Process) |
BRCA1 | 11 | BioCarta |
Epithelial-specific genes | 27 | UniGEM V microarray: stroma vs epithelial cells |