Skip to main content

Table 4 Clustering of sequences of bacterial genomes using SPC, gSPC and TRIBE-MCL algorithms

From: Super paramagnetic clustering of protein sequences

K cases clusters true positive false positive false negative specificity a posteriori sensitivity a priori sensitivity
SPC
2 646 157 5365 357 99 93.8 98.2 12.1
6 4652 794 34699 2635 2624 92.9 93.0 78.2
20 5072 637 35862 3840 5396 86.9 90.3 80.1
all NN 4993 592 34375 4160 6241 89.2 84.6 77.5
TRIBE-MCL
  4517 704 34563 2475 3042 93.3 91.9 77.9
gSPC
6 4612 710 34631 2472 2365 93.3 93.6 78.2
20 4988 115 37574 2836 2948 93.0 92.7 84.7
All NN 5043 18 37862 2968 3105 92.7 92.4 85.4