Table 1 Results of the BioCreative competition. Summary of submitted search runs. The table contains details of parameter sets (D# denotes disambiguation threshold, O(+/-) use of organism disambiguation, S(+/-) significance of dash at end of synonym) and resulting performance. Values where ProMiner achieved the best rank of all participants are printed in bold.
From: ProMiner: rule-based protein and gene entity recognition
Fly | Mouse | Yeast | ||||||
|---|---|---|---|---|---|---|---|---|
1 | 2 | 3 | 1 | 2 | 3 | 1 | 2 | |
Disambiguation (D#) | D3 | D1 | D3 | D3 | D1 | D5 | D3 | D1 |
Organism O(+/-) | O+ | O+ | O+ | O- | O+ | O- | O- | O- |
Dash significance S(+/-) | S- | S+ | S+ | S- | S+ | S+ | S- | S- |
F-measure | 0.781 | 0.816 | 0.787 | 0.771 | 0.776 | 0.79 | 0.897 | 0.899 |
Precision | 0.728 | 0.831 | 0.744 | 0.752 | 0.809 | 0.766 | 0.951 | 0.966 |
Recall | 0.841 | 0.8 | 0.834 | 0.79 | 0.746 | 0.814 | 0.848 | 0.84 |