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Table 1 Results of the BioCreative competition. Summary of submitted search runs. The table contains details of parameter sets (D# denotes disambiguation threshold, O(+/-) use of organism disambiguation, S(+/-) significance of dash at end of synonym) and resulting performance. Values where ProMiner achieved the best rank of all participants are printed in bold.

From: ProMiner: rule-based protein and gene entity recognition

  Fly Mouse Yeast
  1 2 3 1 2 3 1 2
Disambiguation (D#) D3 D1 D3 D3 D1 D5 D3 D1
Organism O(+/-) O+ O+ O+ O- O+ O- O- O-
Dash significance S(+/-) S- S+ S+ S- S+ S+ S- S-
F-measure 0.781 0.816 0.787 0.771 0.776 0.79 0.897 0.899
Precision 0.728 0.831 0.744 0.752 0.809 0.766 0.951 0.966
Recall 0.841 0.8 0.834 0.79 0.746 0.814 0.848 0.84