Skip to main content

Table 1 Results in BioCreAtIvE Task 1B: Our results compared to results with highest overall F-measure. For mouse and fly the highest F-measure is achieved by ProMiner. Our yeast result was obtained by exact matching of the curated list, no post filter was applied. Mouse(1) is the exact search with the curated list. Mouse(2) was additionally filtered with the rule-based post filter. Our fly results were obtained as post-evaluation by exact matching of the curated list and application of the SVM-based post filter.

From: A simple approach for protein name identification: prospects and limits

 

Yeast

Yeast max.

Mouse (1)

Mouse (2)

Mouse max.

Fly (post-eval.)

Fly max.

F-measure

0.897

0.921

0.764

0.773

0.790

0.768

0.815

Precision

0.917

0.950

0.735

0.764

0.766

0.802

0.831

Recall

0.878

0.894

0.796

0.781

0.814

0.737

0.800

TP

538

548

433

425

443

316

343

FP

49

29

156

131

135

78

70

FN

75

65

111

119

101

113

86