Table 1 Statistics on sequence analysis. Data are derived from the outputs of the programs invoked by the pipeline. (1)Each SNP report contains data on one or more putative SNP sites. (2)The unigene dataset encompasses all the singlets plus the longest sequence of each contig. (3)Annotation threshold: E-value < 1e-10.
Sequence Number | Sequence % | |
|---|---|---|
Total number of sequences | 18,630 | |
Average sequence base count | 544.52 | |
Number of singletons | 6,891 | 36.99 |
Number of contigs | 2,328 | |
Number of sequences in contigs | 11,739 | 63.01 |
Average number of sequences in each contig | 5.04 | |
Number of SNP reports (1) | 166 | |
Number of putative unigenes (2) | 9,219 | 49.48 |
Annotated sequences (NCBI blast) (3) | 13,114 | 70.39 |
Annotated sequences (GO blast) (3) | 9,056 | 48.61 |
Number of enzyme sequences | 661 | 3.55 |
Number of sequences linked to KEGG metabolic pathways | 282 | 1.51 |