| Â | Â | H_MINT | H_MINT ctrl | Sanger | Sanger ctrl. | OPHID | OPHID ctrl. | HEN | HEN ctrl. |
|---|
| Â | Nr of Edges | 7658 | 7658 | 26590 | 26590 | 12887 | 12887 | 23332 | 23332 |
iHOP* (sentence) | 278,452 | 522 (6.8) | 57 (0.7) | 857 (3.2) | 233 (0.8) | 941 (7.3) | 88 (0.7) | 5293 (22.6) | 615 (2.7) |
iHOP (pattern) | 47,807 | 229 (3) | 9 (0.1) | 254 (1) | 53 (0.2) | 468 (3.6) | 14 (0.1) | 2675 (11.5) | 176 (0.7) |
- *The iHOP (sentence) network includes interactions between proteins whose names are found in the same sentence in an abstract. iHOP (pattern) is a subnetwork linking proteins found in a pattern of type gene_name_A/verb/ gene_name_B. The networks that are compared with iHOP are described in the main text. The corresponding 'ctrl' networks are scrambled networks containing the same nodes and the same number of edges. For this comparison we mapped all the proteins to Locus Link ids. In this process proteins (and their interactions) that could not be confidently mapped were eliminated from the networks.
