Figure 3

Curve-fit normalization of affine transformed data. Curve-fit normalization of ${\mathcal{A}}_1$ transformed data. Left: Log-ratios as a function of log-intensities for different fold changes. Note that the distance between up- and down-regulated genes at any intensity is the same before and after the normalization. Right: Normalized log-ratios versus true log-ratios. We see that intensity-dependent artifacts have been removed for the observed and true log-ratios where all curves intersect (here at (0, 0)).