The effect of oligonucleotide microarray data pre-processing on the analysis of patient-cohort studies

BMC Bioinformatics

Table 4 CNS dataset, GLIO samples vs. others.

		MAS	dChip	RMA	GCRMA
SAM q-values	MAS	400
	dChip	0.39	714
	RMA	0.50	0.54	666
	GCRMA	0.52	0.39	0.58	330
t-test p-values	MAS	224
	dChip	0.36	303
	RMA	0.43	0.51	159
	GCRMA	0.47	0.37	0.55	123
Wilcoxon test p-values	MAS	17
	dChip	0.41	17
	RMA	0.46	0.29	18
	GCRMA	0.45	0.26	0.5	14

ISSN: 1471-2105