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Figure 2 | BMC Bioinformatics

Figure 2

From: Utilization of two sample t-test statistics from redundant probe sets to evaluate different probe set algorithms in GeneChip studies

Figure 2

Correlation of RPSs for GeneLogic dataset. (a) Correlation of t-test statistics between RPSs for data from probe set algorithm RMA, MAS5.0, dChip-PM, and dChip-PM/PM at all 6 dilution levels (e.g. C10.0 stands for dilution level 10.0). (b) The distributions of the correlation coefficients from 1,000 simulated datasets with random t-test statistic pairs for data from each probe set algorithm. The results from dilution level 7.5 are shown. Correlation coefficients for all data from RMA, MAS5.0, dChip-PM (dChip-a) and dChip-PM/PM (dChip-b) are centered at zero.

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BMC Bioinformatics

ISSN: 1471-2105

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