Table 4 Locally optimal single BLASTZ seeds for noncoding HSPs. A transition is allowed in any one of the inspected positions listed for a seed.
From: Choosing the best heuristic for seeded alignment of DNA sequences
(m + w) | Seed |
|---|---|
12 | {0,1,2,4,5,9,11,12,15,16,17,18} |
11 | {0,1,2,3,7,10,11,13,15,16,17} |
10 | {0,1,2,5,6,8,12,13,14,15} |
9 | {0,1,2,6,7,9,10,12,13} |