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Figure 5 | BMC Bioinformatics

Figure 5

From: How to decide? Different methods of calculating gene expression from short oligonucleotide array data will give different results

Figure 5

Reproducibility. Reproducibility of expression data between three biological replicates (air), compared between MAS 5.0, dChip PM, dChip PMMM, RMA, GC-RMA and PDNN. Reproducibility is calculated as the standard deviation divided by the average signal, which is the coefficient of variation (CV). The CV values are sorted from low to high. The PM, RMA and PDNN algorithms are giving the best reproducible results and MAS 5.0 the worst. Reproducibility of the two other replicated treatments ethylene and low-light gave similar results (data not shown).

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BMC Bioinformatics

ISSN: 1471-2105

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