Table 2 Summary of all co-distribution analyses. Abbreviations for species names: S6803, Synechocystis PCC 6803; Agrtu, Agrobacterium tumefaciens; Deira, Deinococcus radiodurans; Pseae, Pseudomonas aeruginosa. In cases where the results are given by two numbers separated by "/", the first number stands for the number of proteins that are listed among the first 100 of the co-distribution tables, while the second number stands for the total of all proteins in this organisms. The numbers in parentheses are the corresponding % values.
Query protein; species | Â | global BLAST with E value of 0.000001 | global BLAST with E value of 10 |
|---|---|---|---|
D1 (photosynthesis); S6803 | number of proteins in analysis | 3153 | 3166 |
| Â | BLAST homologs in number of species | 6 | 16 |
| Â | Remarks | 142 proteins have the same distribution as D1, for details see text | see text |
Agp1 (phytochrome 1); Agrtu | number of proteins in analysis | 5091 | 5096 |
| Â | BLAST homologs in number of species | 65 | 65 |
| Â | co-distributed "two component sensors" | 20/55 (20%/1.08%) | 18/55 (18%/1.08%) |
| Â | co-distributed "two component response regulators" | 8/48 (8%/0.94%) | 7/48 (7%/0.94%) |
| Â | co-distributed "transcriptional regulators" | 13/312 (13%/6.12%) | 32/312 (32%/6.12%) |
Agp2 (phytochrome 2); Agrtu | number of proteins in analysis | 5091 | 5096 |
| Â | BLAST homologs in number of species | 15 | 61 |
| Â | co-distributed "two component sensors" | 9/55 (9%/1.08%) | 15/55 (15%/1.08%) |
| Â | co-distributed "two component response regulators" | 1/48 (1%/0.94%) | 12/48 (12%/0.94%) |
| Â | co-distributed "transcriptional regulators" | 4/312(4%/6.12%) | 15/312(15%/6.12%) |
AgR (response regulator); Agrtu | number of proteins in analysis | 5091 | 5096 |
| Â | BLAST homologs in number of species | 19 | 72 |
| Â | co-distributed "two component sensors" | 20/55 (20/1.08) | 24/55 (24/1.08) |
| Â | co-distributed "two component response regulators" | 4/48 (4%/0.94%) | 5/48 (7%/0.94%) |
| Â | co-distributed "transcriptional regulators" | 1/312 (1%/6.12%) | 10/312 (10%/6.12%) |
ExsF (response regulator); Agrtu | number of proteins in analysis | 5091 | 5096 |
| Â | BLAST homologs in number of species | 7 | 10 |
| Â | co-distributed "two component sensors" | 6/55 (6/1.08) | 13/55 (13/1.08) |
| Â | co-distributed "two component response regulators" | 2/48 (2%/0.94%) | 9/48 (13%/0.94%) |
| Â | co-distributed "transcriptional regulators" | 5/312 (5%/6.12%) | 37/312 (37%/6.12%) |
Query protein; species | Â | global BLAST with E value of 0.000001 | global BLAST with E value of 10 |
ExsG (histidine kinase); Agrtu | number of proteins in analysis | 5091 | 5096 |
| Â | BLAST homologs in number of species | 17 | 80 |
| Â | co-distributed "two component sensors" | 10/55 (10/1.08) | 20/55 (20/1.08) |
| Â | co-distributed "two component response regulators" | 3/48 (3%/0.94%) | 6/48 (6%/0.94%) |
| Â | co-distributed "transcriptional regulators" | 5/312 (5%/6.12%) | 22/312 (22%/6.12%) |
BhpP (phytochrome); Deira | number of proteins in analysis | 3176 | 3182 |
| Â | BLAST homologs in number of species | 30 | 57 |
| Â | co-distributed "histidine kinases" | 13/19 (13%/0.60%) | 12/19 (13%/0.60%) |
| Â | co-distributed "response regulators" | 11/26(11%/0.82%) | 6/26(6%/0.82%) |
BhpP (phytochrome); Pseae | number of proteins in analysis | 5549 | 5566 |
| Â | BLAST homologs in number of species | 63 | 69 |
| Â | co-distributed "two-component sensors" | 20/51 (20%/0.92%) | 24/51 (24%/0.92%) |
| Â | co-distributed "two-component response regulators" | 19/56 (19%/1.01%) | 16/56 (16%/1.01%) |
Cph1 (phytochrome); S6803 | number of proteins in analysis | 3153 | 3166 |
| Â | BLAST homologs in number of species | 62 | 62 |
| Â | co-distributed "histidine kinase" | 15/28 (15%/0.80%) | 13/28 (13%/0.80%) |
| Â | co-distributed "AraC/PatA/CheY/NarL/OmpR subfamily" | 16/31 (16%/0.89%) | 17/31 (17%/0.89%) |
Rcp1 (response regulator); S6803 | number of proteins in analysis | 3153 | 3166 |
| Â | BLAST homologs in number of species | 21 | 62 |
| Â | co-distributed "histidine kinase" | 8/27 (8%/0.77%) | 17/27 (17%/0.77%) |
| Â | co-distributed "AraC/PatA/CheY/NarL/OmpR subfamily" | 1/31 (1%/0.89%) | 22/31 (22%/0.89%) |