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Table 5 Phytochromes as query and selected target proteins. The co-distribution of selected proteins, presented as in Table 3.

From: A computational approach to discovering the functions of bacterial phytochromes by analysis of homolog distributions

query\target

photolyase/cryptochrome

glutamate synthases

methionine synthase

AgrtuAgp1

156/17

4,6,2552 (923)/3,5,10 (988)1

3/87

AgrtuAgp2

1855/2054

2767,2841,4656 (2999)/144,201,247 (950)1

1749/373

DeiraBphP

n.a.

45 (614)/13 (1593) 2

19/1534

PseaBphP

655/958

74 (273)/123 (235) 2

19/419

S6803Cph1

420,421/630,756

7,8 (311)/12,53 (916) 3

5/304

  1. 1 three large subunits and one small subunit (positions of the latter are given in brackets)
  2. 2 one large subunit and one small subunit (positions of the latter are given in brackets)
  3. 3 two ferredoxin-dependent and one NADH-dependent enzymes (positions of the latter are given in brackets)
  4. 4 designated as 5-methyltetrahydrofolate-homocysteine methyltransferase
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BMC Bioinformatics

ISSN: 1471-2105

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