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Table 5 Abalone sperm lysin data [23] analyzed with Model A1 and 4 (hydrophobicity, volume, polarity and charge) partitions: sites that have high posterior probabilities in each site class.

From: Identification of physicochemical selective pressure on protein encoding nucleotide sequences

Property Sites identified
  ω≤1, γ≤1 ω≤1, γ≥1 ω≥1, γ≤1 ω≥1, γ≥1
hydrophobicity 16, 20, 23,26, 31,34,39,48, 52,54,55,57, 58,59,60,62, 65,66,77,78,84, 85,89,90,91,92, 93,102,111,112, 118 none 47,69,129 10,12,32,33,36, 37,40,44,45,64, 67,68,70,72,74, 82,83,86,87,106, 107,113,116, 120,123,127
volume 13,18,19,23,29, 35,39,50,51,53, 54,55,56,57,65, 76,77,78,85,89, 90,92,93,94,95, 102,111,112,117 17,25,27,30,40, 68,69,73,80,96, 99,101,114, 127,129,131 none 11,32,33,36,41, 64,70,74,83,86, 87,120
polarity 16,18,20,23,26, 28,31,34,35,38, 39,46,48,50,52, 55,56,57,58,59, 60,62,65,66,76, 77,78,84,85,89, 90,91,92,93,94, 95,102,104,112, 118,128,130 none 43 10,11,12,14,15, 32,33,36,37,40, 44,64,67,70,74, 79,83,86,87,106, 116,120,123,127
charge 16,20,23,28,29, 46,48,52,54,59, 65,84,85,91,92, 102,104,109,111, 112,117,118,128 68,69,96,97,98, 129 30,33,47,63,64, 71,75,79,80,81, 99,113,116,121, 124,127 10,14,44,67, 70,74,115,120
  1. Site listed have posterior probabilities >0.95 being in the indicated site class. Those that are in bold have posterior probabilities >0.99.