Table 5 Abalone sperm lysin data [23] analyzed with Model A1 and 4 (hydrophobicity, volume, polarity and charge) partitions: sites that have high posterior probabilities in each site class.
From: Identification of physicochemical selective pressure on protein encoding nucleotide sequences
Property | Sites identified | |||
|---|---|---|---|---|
ω≤1, γ≤1 | ω≤1, γ≥1 | ω≥1, γ≤1 | ω≥1, γ≥1 | |
hydrophobicity | 16, 20, 23,26, 31,34,39,48, 52,54,55,57, 58,59,60,62, 65,66,77,78,84, 85,89,90,91,92, 93,102,111,112, 118 | none | 47,69,129 | 10,12,32,33,36, 37,40,44,45,64, 67,68,70,72,74, 82,83,86,87,106, 107,113,116, 120,123,127 |
volume | 13,18,19,23,29, 35,39,50,51,53, 54,55,56,57,65, 76,77,78,85,89, 90,92,93,94,95, 102,111,112,117 | 17,25,27,30,40, 68,69,73,80,96, 99,101,114, 127,129,131 | none | 11,32,33,36,41, 64,70,74,83,86, 87,120 |
polarity | 16,18,20,23,26, 28,31,34,35,38, 39,46,48,50,52, 55,56,57,58,59, 60,62,65,66,76, 77,78,84,85,89, 90,91,92,93,94, 95,102,104,112, 118,128,130 | none | 43 | 10,11,12,14,15, 32,33,36,37,40, 44,64,67,70,74, 79,83,86,87,106, 116,120,123,127 |
charge | 16,20,23,28,29, 46,48,52,54,59, 65,84,85,91,92, 102,104,109,111, 112,117,118,128 | 68,69,96,97,98, 129 | 30,33,47,63,64, 71,75,79,80,81, 99,113,116,121, 124,127 | 10,14,44,67, 70,74,115,120 |