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Table 1 Comparison of background and transformation techniques

From: CARMA: A platform for analyzing microarray datasets that incorporate replicate measures

Number of Genes Background Subtracted LinlogTransformed Background Subtracted Log2 Transformed Non-Background Subtracted Log2 Transformed Non-Background Subtracted Linlog Transformed
10 778 375 565 565
100 3091 1464 2087 2087
1000 7084 3565 5019 5019
  1. The sum of the gene Variety term ANOVA F values for the first 10, 100, or 1000 genes ranked by Variety term ANOVA F value. Larger numbers represent higher ratios of the between mouse variance over the within mouse variance.