Table 4 Correlations at the amino acid level as characterized by the χ2 measure (PDB_SELECT set).
From: Protein secondary structure prediction for a single-sequence using hidden semi-Markov models
| Â | Helix | Strand | Loop | |||
|---|---|---|---|---|---|---|
Separation | χ 2 | # of pairs | χ 2 | # of pairs | χ 2 | # of pairs |
1 | 1854.34 | 118,324 | 2579.85 | 60,423 | 9600.85 | 154,404 |
2 | 7008.83 | 103,853 | 1832.78 | 44,121 | 5774.58 | 124,249 |
3 | 2454.03 | 89,414 | 1116.65 | 30,909 | 4828.13 | 100,325 |
4 | 5095.27 | 77,302 | 535.02 | 20,336 | 2276.21 | 80,930 |
5 | 2052.68 | 67,036 | 461.70 | 12,584 | 1298.16 | 66,109 |
6 | 1295.46 | 57,602 | 398.44 | 7361 | 950.66 | 54,993 |
7 | 2196.94 | 49,017 | 392.93 | 4196 | 895.42 | 46,391 |
8 | 627.00 | 41,350 | 355.81 | 2292 | 761.48 | 39,611 |