Table 3 PE prediction: four-class problem. Accuracy estimates with 95% confidence intervals and SOV. A * in the first three columns of a row indicates whether the results are obtained augmenting the network input with secondary structure predicted by Porter (P), hydrophobicity profile using the interactivity scale of [20] (H) and using second stage filtering network (F).
From: A two-stage approach for improved prediction of residue contact maps
P | H | F | Q 4 | Q 0 | Q 1 | Q 2 | Q 3 | SOV |
|---|---|---|---|---|---|---|---|---|
- | - | - | 45.6 ± .5 | 59.9 ± .6 | 29.4 ± .4 | 26.8 ± .4 | 65.0 ± .6 | 33.2 |
- | - | * | 46.0 ± .5 | 58.5 ± .5 | 30.6 ± .4 | 30.5 ± .4 | 63.3 ± .6 | 34.6 |
* | - | - | 46.2 ± .5 | 62.1 ± .6 | 30.5 ± .4 | 27.3 ± .4 | 63.1 ± .6 | 37.3 |
* | - | * | 46.5 ± .5 | 60.7 ± .5 | 32.3 ± .4 | 29.6 ± .4 | 61.8 ± .5 | 37.4 |
* | * | - | 45.9 ± .5 | 61.5 ± .5 | 30.0 ± .4 | 27.3 ± .3 | 63.3 ± .6 | 37.1 |
* | * | * | 46.5 ± .5 | 60.0 ± .5 | 32.2 ± .4 | 30.4 ± .4 | 61.9 ± .6 | 37.8 |
baseline | 30.7 ± .4 | 48.1 ± .5 | 5.4 ± .2 | 8.5 ± .2 | 59.0 ± .6 | - | ||