Skip to main content

Advertisement

Table 3 PE prediction: four-class problem. Accuracy estimates with 95% confidence intervals and SOV. A * in the first three columns of a row indicates whether the results are obtained augmenting the network input with secondary structure predicted by Porter (P), hydrophobicity profile using the interactivity scale of [20] (H) and using second stage filtering network (F).

From: A two-stage approach for improved prediction of residue contact maps

P H F Q 4 Q 0 Q 1 Q 2 Q 3 SOV
- - - 45.6 ± .5 59.9 ± .6 29.4 ± .4 26.8 ± .4 65.0 ± .6 33.2
- - * 46.0 ± .5 58.5 ± .5 30.6 ± .4 30.5 ± .4 63.3 ± .6 34.6
* - - 46.2 ± .5 62.1 ± .6 30.5 ± .4 27.3 ± .4 63.1 ± .6 37.3
* - * 46.5 ± .5 60.7 ± .5 32.3 ± .4 29.6 ± .4 61.8 ± .5 37.4
* * - 45.9 ± .5 61.5 ± .5 30.0 ± .4 27.3 ± .3 63.3 ± .6 37.1
* * * 46.5 ± .5 60.0 ± .5 32.2 ± .4 30.4 ± .4 61.9 ± .6 37.8
baseline 30.7 ± .4 48.1 ± .5 5.4 ± .2 8.5 ± .2 59.0 ± .6 -