Skip to main content

Table 1 Libraries available and dependencies.

From: Bio++: a set of C++ libraries for sequence analysis, phylogenetics, molecular evolution and population genetics

Library Utils NumCalc SeqLib Content
Utils     Basal classes and utilities. Exceptions, text and file manipulation.
NumCalc    Numerical calculus. Vector and matrix manipulation, optimization, algebra,
probability distribution and statistics, random number generation.
SeqLib   Sequence manipulation, alphabets, chemical properties and distances,
input/output in various formats (Fasta, Phylip, Clustal, etc.).
PhylLib Phylogenetics. Tree reconstruction by maximum parsimony, distance methods or maximum likelihood,
parameter estimations, ancestral states reconstruction, etc.
PopGenLib Population genetics. Polymorphism statistics,
linkage desequilibrium, neutrality tests and recombination.