Library | Utils | NumCalc | SeqLib | Content |
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Utils | Basal classes and utilities. Exceptions, text and file manipulation. | |||
NumCalc |
| Numerical calculus. Vector and matrix manipulation, optimization, algebra, probability distribution and statistics, random number generation. | ||
SeqLib |
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| Sequence manipulation, alphabets, chemical properties and distances, input/output in various formats (Fasta, Phylip, Clustal, etc.). | |
PhylLib |
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| Phylogenetics. Tree reconstruction by maximum parsimony, distance methods or maximum likelihood, parameter estimations, ancestral states reconstruction, etc. |
PopGenLib |
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| Population genetics. Polymorphism statistics, linkage desequilibrium, neutrality tests and recombination. |