Figure 2

XcisClique Schematic. Contents of thickly outlined boxes indicate processing. Contents of thinly outlined boxes describe data. 1. Input geneset G, 2. Input set of patterns P, 3. Input set of treatments T, 4. Find matches of P on promoters of G to get occurrence graph $\mathcal{O}$, 5. Feed $\mathcal{O}$ to Apriori to identify bicliques, 6. Evaluate bicliques with respect to statistical over-representation of patterns to get $\mathscr{H}$ _tail , 7. Evaluate bicliques over T to get F _SAV , 8. Combine $\mathscr{H}$ _tail and F _SAV for each biclique and rank bicliques, 9. Visualize arrangement of cis-elements on promoters, biclique-wise, 10. Visualize gene expression vectors biclique-wise.