BMC Bioinformatics

Table 4 The analysis of two-group DNA pooling data in Example 2 (Part 2: The allele frequency estimate (AFE) and standard error (s.e.))

From: PDA: Pooled DNA analyzer

The first group
		Unadjusted		CPA_H adjustment		CPA_U adjustment		CPA_G adjustment
OBS	SNP	AFE	s.e.	AFE	s.e.	AFE	s.e.	AFE	s.e.
1	6260	0.954	0.010	0.924	0.013	0.925	0.013	0.925	0.013
2	6267	0.961	0.009	0.937	0.012	0.939	0.012	0.938	0.012
3	6272	0.671	0.023	0.593	0.024	0.595	0.024	0.596	0.024
4	6415	0.207	0.020	0.122	0.016	0.128	0.016	0.123	0.016
The second group
		Unadjusted		CPA_H adjustment		CPA_U adjustment		CPA_G adjustment
OBS	SNP	AFE	s.e.	AFE	s.e.	AFE	s.e.	AFE	s.e.
1	6260	0.899	0.015	0.839	0.018	0.840	0.018	0.840	0.018
2	6267	0.877	0.016	0.813	0.019	0.817	0.019	0.813	0.019
3	6272	0.690	0.023	0.614	0.024	0.616	0.024	0.617	0.024
4	6415	0.298	0.022	0.184	0.019	0.194	0.019	0.186	0.019

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ISSN: 1471-2105

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