BMC Bioinformatics

Table 7 The multipoint analysis using peak intensity data in Example 3 (Part 2: The allele frequency estimate (AFE) and standard error (s.e.))

From: PDA: Pooled DNA analyzer

The first group
		Unadjusted		CPA_H adjustment		CPA_U adjustment		CPA_G adjustment
OBS	SNP	AFE	s.e.	AFE	s.e.	AFE	s.e.	AFE	s.e
1	6421	0.816	0.019	0.626	0.024	0.627	0.024	0.627	0.024
2	6422	0.505	0.024	0.365	0.023	0.367	0.024	0.368	0.024
3	6419	0.457	0.024	0.330	0.023	0.332	0.023	0.332	0.023
4	6409	0.935	0.012	0.914	0.014	0.915	0.014	0.915	0.014
5	6424	0.649	0.023	0.507	0.024	0.509	0.024	0.509	0.024
6	6425	0.754	0.021	0.636	0.023	0.650	0.023	0.644	0.023
7	6423	0.974	0.008	0.949	0.011	0.949	0.011	0.949	0.011
8	6428	0.531	0.024	0.357	0.023	0.359	0.023	0.359	0.023
9	6429	0.651	0.023	0.514	0.024	0.516	0.024	0.516	0.024
10	6430	0.668	0.023	0.559	0.024	0.560	0.024	0.560	0.024
The second group
		Unadjusted		CPA_H adjustment		CPA_U adjustment		CPA_G adjustment
OBS	SNP	AFE	s.e.	AFE	s.e.	AFE	s.e.	AFE	s.e.
1	6421	0.776	0.020	0.566	0.024	0.567	0.024	0.568	0.024
2	6422	0.589	0.024	0.447	0.024	0.448	0.024	0.449	0.024
3	6419	0.561	0.024	0.428	0.024	0.431	0.024	0.430	0.024
4	6409	0.927	0.013	0.904	0.014	0.905	0.014	0.905	0.014
5	6424	0.590	0.024	0.445	0.024	0.447	0.024	0.446	0.024
6	6425	0.733	0.022	0.609	0.024	0.624	0.024	0.618	0.024
7	6423	0.968	0.009	0.938	0.012	0.937	0.012	0.938	0.012
8	6428	0.543	0.024	0.368	0.024	0.370	0.024	0.369	0.024
9	6429	0.682	0.023	0.548	0.024	0.550	0.024	0.550	0.024
10	6430	0.656	0.023	0.546	0.024	0.548	0.024	0.548	0.024

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ISSN: 1471-2105

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