From: Characterizing disease states from topological properties of transcriptional regulatory networks
Promoter Range | 1 kb upstream | 1 kb upstream | 5 kb upstream | 5 kb upstream | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
PWM | All Proflies | Limited Profiles | All Proflies | Limited Profiles | ||||||||
Classifier | Expression | Lower | Upper | Feature Selection | Accuracy | SD | Accuracy | SD | Accuracy | SD | Accuracy | SD |
IB1 | Threshold | 0.2 | 0.8 | InfoGain | 91.56% | 235% | 81.65% | 4.22% | 93.06% | 1.80% | 93.27% | 2.35% |
IB1 | Threshold | 0.33 | 0.66 | InfoGain | 91.89% | 2.95% | 90.72% | 2.90% | 95.57% | 2.04% | 93.62% | 1.78% |
IB1 | Threshold | 0.2 | 0.8 | ChiSquared | 89.96% | 2.74% | 81.00% | 4.04% | 93.92% | 1.75% | 92.63% | 2.22% |
IB1 | Threshold | 0.33 | 0.66 | ChiSquared | 91.10% | 2.90% | 90.67% | 2.79% | 94.07% | 2.43% | 93.43% | 2.31% |
IB1 | Tanh | 0.25 | 0.75 | InfoGain | 92.71% | 2.43% | 92.74% | 2.30% | 92.13% | 2.47% | 92.00% | 3.01% |
Naive Bayes | Threshold | 0.2 | 0.8 | InfoGain | 90.47% | 2.85% | 8235% | 3.78% | 96.04% | 1.34% | 94.98% | 1.41% |
Naive Bayes | Threshold | 0.2 | 0.8 | InfoGain | 91.67% | 2.53% | 83.18% | 3.11% | 94.39% | 1.73% | 93.78% | 2.00% |