Figure 2

Cell cycle expression profiles for genes with (a) negative log likelihood ratio (better fit to the neutral model) MCB sites and (b) positive log likelihood ratio MCB sites in their promoter. The x-axis represents experimental timepoints through the cell cycle, and the y-axis represents relative gene expression levels (Z-scores). (c) Log likelihood ratios of the true MCB motif (blue) and shuffled MCB motifs (purple).