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Table 5 The ten highest ranked domain-domain interactions. The ten highest ranked domain-domain interactions from the Bayesian approach which are not in iPfam. iPfam_2005 represents domain interactions found in updated version of iPfam (Oct 2005 version).

From: An integrated approach to the prediction of domain-domain interactions

Domain 1

 

Domain 2

 

iPfam_2005

Pfam ID

Accession

Pfam ID

Accession

 

WD40

PF00400

Pkinase

PF00069

 

zf-C2H2

PF00096

Pkinase

PF00069

 

zf-C3HC4

PF00097

zf-C3HC4

PF00097

 

F-box

PF00646

Skp1_POZ

PF03931

 

zf-C4

PF00105

Hormone_recep

PF00104

x

SMC_hinge

PF06470

SMC_N

PF02463

x

Cation_ATPase_N

PF00690

Cation_ATPase_C

PF00689

 

MutS_V

PF00488

MutS_I

PF01624

 

Cadherin

PF00028

Cadherin_C

PF01049

 

dsrm

PF00035

dsrm

PF00035

x