From: Similarity-based gene detection: using COGs to find evolutionarily-conserved ORFs
ORF COG ida | Organism | Genomic coordinatesb | Annotated gene(s) present in COGc | ORF COG ida | Organism | Genomic coordinatesb | Annotated gene(s) present in COGc |
---|---|---|---|---|---|---|---|
Existing annotation of pseudogene | Frameshift 3' fragmentc | ||||||
876 | EcoK12 | 1488620-1487985 | gap | 1036 | Bbur | 21098-20445 | queA |
2340 | Sent | 4738725-4740071 | dhaS/aldA | 1750 | Bhal | 984866-983856 | celB |
2433 | Sent | 4745051-4743573 | hsdB | 1188 | Bhal | 1359362-1360555 | recD |
1895 | Sent | 3243737-3244861 | fadH | 2257 | Bhal | 3182850-3181696 | ilvI/poxB/alsS |
1399 | Sent | 461578-461874 | Â | 88 | Bsub | 3671944-3672555 | gtaB |
653 | Sent | 2505700-2506824 | ptsP | 641 | Hinf | 1525427-1524561 | thiI |
1058 | Sent | 3413535-3416306 | acrD/mdtC/mdtB | 2031 | Hinf | 1719924-1718821 | tldD |
3088 | Sent | 4084807-4083605 | Â | 2473 | Mgal | 431452-431778 | fldA |
815 | Sent | 1360931-1362226 | rhlE | 2309 | Mgen | 416785-416336 | acpD |
3104 | Sent | 4009730-4009993 | Â | 975 | Mmyc | 57011-56760 | recR |
569 | Sent | 1969437-1970648 | penA | 686 | Mmyc | 690895-690356 | rpsB |
 |  |  |  | 1319 | Nmen | 107757-109406 | msbA |
Annotated in GenomeReviews but with different stop | 842 | Nmen | 1995043-1994876 | Â | |||
928 | Bsub | 2500726-2499347 | bfmBC | 556 | VchoI | 553588-552383 | dnaG |
157 | Cper | 2751593-2751051 | rplD | 745 | VchoI | 555313-556182 | gcp |
999 | EcoO157 | 3613249-3610595 | alaS | 106 | VchoI | 1087924-1089819 | uvrB |
107 | Hinf | 655042-654365 | metI | 2435 | VchoI | 2612949-2611972 | Â |
589 | Mpne | 329463-331229 | lepA | 2807 | VchoII | 1060889-1060107 | qseC |
210 | Mpul | 150772-151668 | grpE | Â | Â | Â | Â |
743 | Sent | 2492196-2490763 | gltX | Frameshift 5' fragmentc | |||
534 | Tpal | 478406-478777 | Â | 697 | Bhal | 3580443-3579682 | csd |
166 | Upar | 279005-279949 | rplV | 2029 | Bsub | 2304436-2305248 | metA |
 |  |  |  | 2049 | Bsub | 3032201-3032512 |  |
Fragments around stop codons (nonsense)c | 2 | Cpne | 383405-384037 | recF | |||
928 | Bsub | 2500726-2499347 | bfmBC | 462 | Cpne | 1088259-1088711 | ispE |
157 | Cper | 2751593-2751051 | rplD | 2769 | EcoK12 | 3814680-3813886 | rph |
999 | EcoO157 | 3613249-3610595 | alaS | 2257 | EcoK12 | 3948538-3949566 | ilvI/poxB/alsS |
107 | Hinf | 655042-654365 | metI | 2433 | Hinf | 232074-232991 | Â |
589 | Mpne | 329463-331229 | lepA | 3066 | Hinf | 1377365-1378063 | dgt |
210 | Mpul | 150772-151668 | grpE | 1075 | Hinf | 1477189-1476557 | pstB |
743 | Sent | 2492196-2490763 | Â | 641 | Hinf | 1526028-1525285 | thiI |
 |  |  |  | 2571 | Nmen | 292645-294051 |  |
 |  |  |  | 220 | Tpal | 220772-221749 | dnaJ |
 |  |  |  | 556 | VchoI | 554244-553561 | dnaG |
 |  |  |  | 1826 | VchoI | 637551-638246 | amt |
 |  |  |  | 42 | VchoI | 851189-849954 | oadA |
 |  |  |  | 1082 | VchoII | 690599-690273 | glpF |