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Table 1 Results. Results of contact predictions for the protein in the data set.

From: Docking protein domains in contact space

PDB code

c 5

c 8

c l2

I 1

I 2

c 5 ( r ) MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqWGJbWydaqhaaWcbaGaeGynaudabaGaeiikaGIaemOCaiNaeiykaKcaaaaa@323F@ (× 10-2)

1d4f

2

7

9

3/6

6/7

3

1jmc

0

0

0

0/7

1/8

3

luae

3

3

6

7/7

5/9

2

1a8e

0

0

1

3/7

0/7

5

larz

2

6

8

5/7

6/8

3

2dri

2

4

5

5/7

5/7

6

1tfb

1

4

6

5/7

3/6

9

13pk

0

4

7

5/8

6/7

2

2nad

1

4

7

3/5

2/5

2

1ex7

0

0

0

1/6

0/6

6

ltde

1

1

2

2/8

4/6

2

9aat

3

4

5

6/6

5/8

3

6adh

1

3

6

3/6

3/6

3

1h9m

3

4

7

4/6

4/6

12

8atc

4

8

9

6/6

5/8

6

1l7p

1

4

9

5/7

3/5

12

1njf

2

4

8

3/5

2/6

3

4cts

0

3

5

5/7

6/8

4

1dpp

0

0

0

0/7

2/8

3

1dv2

1

2

4

1/5

4/6

2

  1. c5 is the number (out of 10) of predicted contacts that are within a distance of 5 Å (i.e. correctly predicted contacts); c8 and c12 are the numbers of predicted contacts within respectively 8 Å and 12 Å. I1 and I2 are the fractions of correctly predicted residues at the interface in the two domains. 1471-2105-7-310-i1http://www.w3.org/1998/Math/MathMLc5false(rfalse)MathType-MTEFMathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaacqWGJbWydaqhaaWcbaGaeGynaudabaGaeiikaGIaemOCaiNaeiykaKcaaaaa@323F@ is the expected number of randomly predicted correct contacts.
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BMC Bioinformatics

ISSN: 1471-2105

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