Table 1 Identification of cell type-specific genes. Genes are ranked from highest to lowest signal/noise ratio. The expression profiles of genes in bold face are highly correlated (Pearson Correlation Coefficient > 0.5) with the average profile of the tissue-specific genes across mammary development stages.
From: Computational expression deconvolution in a complex mammalian organ
Tissue/Cell | Affy ID | Gene Symbol | Description |
|---|---|---|---|
MEC | 94270_at | Krt1-18 | keratin complex 1, acidic, gene 18 |
| Â | 101009_at | Krt2-8 | keratin complex 2, basic, gene 8 |
| Â | 101574_f_at | Serpina1a | serine (or cysteine) proteinase inhibitor, clade A, member 1a |
| Â | 99649_at | Gclc | glutamate-cysteine ligase, catalytic subunit |
| Â | 101025_f_at | Sprr2a | small proline-rich protein 2A |
| Â | 160099_at | Lgals4 | lectin, galactose binding, soluble 4 |
| Â | 100329_at | Serpina1d | serine (or cysteine) proteinase inhibitor, clade A, member 1d |
| Â | 96596_at | Ndrg1 | N-myc downstream regulated gene 1 |
| Â | 92550_at | Krt1-19 | keratin complex 1, acidic, gene 19 |
| Â | 96735_at | Stard10 | START domain containing 10 |
BAT | 99507_at | Ucp1 | uncoupling protein 1, mitochondrial |
| Â | 161519_f_at | Â | Mus musculus cDNA, 3' end/clone = 1700127J22/clone_end = 3' |
| Â | 95695_at | Slc25a20 | solute carrier family 25, member 20 |
| Â | 102431_at | Mapt | microtubule-associated protein tau |
| Â | 98527_at | Dci | dodecenoyl-Coenzyme A delta isomerase |
| Â | 100967_at | Slc27a2 | solute carrier family 27 (fatty acid transporter), member 2 |
| Â | 99994_at | Cidea | cell death-inducing DFFA-like effector A |
| Â | 96879_at | Ogdh | oxoglutarate dehydrogenase (lipoamide) |
| Â | 102668_at | Ppara | peroxisome proliferator activated receptor alpha |
| Â | 98984_f_at | Gpd2 | glycerol phosphate dehydrogenase 2, mitochondrial |
WAT | 102366_at | Retn | resistin |
| Â | 99112_at | Slc25a10 | solute carrier family 25, member 10 |
| Â | 94309_g_at | Fbln1 | fibulin 1 |
| Â | 100464_at | 3110043O21Rik | RIKEN cDNA 3110043O21 gene |
| Â | 102707_f_at | Serpina3c | serine (or cysteine) proteinase inhibitor, clade A, member 3C |
| Â | 160989_r_at | B430320C24Rik | RIKEN cDNA B430320C24 gene |
| Â | 99637_at | Col15a1 | procollagen, type XV |
| Â | 96742_at | Dpt | dermatopontin |
| Â | 97835_at | Rarres2 | retinoic acid receptor responder (tazarotene induced) 2 |
| Â | 96132_at | AB023957 | cDNA sequence AB023957 |
3T3 Cells | 101975_at | Dlk1 | delta-like 1 homolog (Drosophila) |
| Â | 104286_at | Slc38a4 | solute carrier family 38, member 4 |
| Â | 104544_at | 4930517K11Rik | RIKEN cDNA 4930517K11 gene |
| Â | 94338_g_at | Gas2 | growth arrest specific 2 |
| Â | 99051_at | S100a4 | S100 calcium binding protein A4 |
| Â | 103327_at | Prrx2 | paired related homeobox 2 |
| Â | 93574_at | Serpinf1 | serine (or cysteine) proteinase inhibitor, clade F, member 1 |
| Â | 93681_at | Fzd2 | frizzled homolog 2 (Drosophila) |
| Â | 97943_at | Capn6 | calpain 6 |
| Â | 160939_at | Twist2 | twist homolog 2 (Drosophila) |
| Â | 160095_at | Lox | lysyl oxidase |
| Â | 99435_at | Fgf7 | fibroblast growth factor 7 |
| Â | 98501_at | Il1rl1 | interleukin 1 receptor-like 1 |
B Cells | 99945_at | Cd19 | CD19 antigen |
| Â | 98035_g_at | H2-DMb1 | histocompatibility 2, class II, locus Mb1 |
| Â | 101878_at | Cd72 | CD72 antigen |
| Â | 104429_at | Tap2 | transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) |
| Â | 103040_at | Cd83 | CD83 antigen |
| Â | 92741_g_at | Igh-6 | immunoglobulin heavy chain 6 (heavy chain of IgM) |
| Â | 102939_s_at | Cd22 | CD22 antigen |
| Â | 92436_at | Stk23 | serine/threonine kinase 23 |
| Â | 92359_at | Blk | B lymphoid kinase |
Plasma cells | 101656_f_at | Igk-V1 | immunoglobulin kappa chain variable 1 (V1) |
| Â | 101870_at | Igh-4 | immunoglobulin heavy chain 4 (serum IgG1) |
| Â | 92470_f_at | Igh-VJ558 | immunoglobulin heavy chain (J558 family) |
| Â | 102823_at | AU044919 | M. musculus rearranged immunoglobulin gamma 2b heavy chain |
| Â | 102154_f_at | Igk-V8 | immunoglobulin kappa chain variable 8 (V8) |
| Â | 97008_f_at | AI324046 | expressed sequence AI324046 |
| Â | 100377_f_at | Igh-V | immunoglobulin heavy chain variable region |
| Â | 96963_s_at | Â | immunoglobulin light chain variable region |
| Â | 97720_at | Igh-VS107 | immunoglobulin heavy chain (S107 family) |
| Â | 100299_f_at | LOC381783 | Similar to immunoglobulin kappa chain |
CD4+ Cells | 100509_at | Rnf19 | ring finger protein (C3HC4 type) 19 |
| Â | 93511_at | Itm2a | integral membrane protein 2A |
| Â | 102661_at | Egr2 | early growth response 2 |
| Â | 101884_at | Xlr4 | X-linked lymphocyte-regulated 4 |
CD8+ Cells | 162410_s_at | Cd8b | CD8 antigen, beta chain |
| Â | 98406_at | Ccl5 | chemokine (C-C motif) ligand 5 |
| Â | 92398_at | BC026744 | cDNA sequence BC026744 |
| Â | 99327_at | Prss19 | protease, serine, 19 (neuropsin) |
| Â | 102975_at | Cd8a | CD8 antigen, alpha chain |
| Â | 97995_at | Tcf7 | transcription factor 7, T-cell specific |
| Â | 92214_at | Ctsw | cathepsin W |
| Â | 92406_at | Cd7 | CD7 antigen |
| Â | 103629_g_at | Lef1 | lymphoid enhancer binding factor 1 |
| Â | 102904_at | H2-Ea | histocompatibility 2, class II antigen E alpha |
Macrophage | 103977_at | F10 | coagulation factor X |
| Â | 101468_at | Pfc | properdin factor, complement |
| Â | 92978_s_at | Serpinb2 | serine (or cysteine) proteinase inhibitor, clade B, member 2 |
| Â | 95637_at | Flnb | filamin, beta |
| Â | 93445_at | Cd5l | CD5 antigen-like |
| Â | 100397_at | Tyrobp | TYRO protein tyrosine kinase binding protein |
| Â | 104541_at | Prtn3 | proteinase 3 |
| Â | 103507_at | Emr1 | EGF-like module containing, mucin-like, hormone receptor-like 1 |
| Â | 95597_at | Ptgs1 | prostaglandin-endoperoxide synthase 1 |
| Â | 93097_at | Arg1 | arginase 1, liver |
| Â | 104354_at | Csf1r | colony stimulating factor 1 receptor |
| Â | 96020_at | C1qb | complement component 1, q subcomponent, beta polypeptide |