From: A methodology for global validation of microarray experiments
Category | Affymetrix | RefSeq Title | FC Microarray* | FC PCR* | ||||||
---|---|---|---|---|---|---|---|---|---|---|
 | Probe Set ID |  | Experiment | Average | Experiment | Average | ||||
 |  |  | 1 | 2 | 3 |  | 1 | 2 | 3 |  |
Top 15 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
1 | 104598_at | dual specificity phosphatase 1 | 3.96 | 4.52 | 5.37 | 4.58 | 6.93 | 6.74 | 8.36 | 7.31 |
2 | 98817_at | follistatin | 3.20 | 4.43 | 3.83 | 3.79 | 4.88 | 4.92 | 3.65 | 4.44 |
3 | 93624_at | RIKEN cDNA 8430417G17 | 3.49 | 3.22 | 4.30 | 3.64 | 9.74 | 10.50 | 7.16 | 9.01 |
4 | 93319_at | RAS p21 protein activator 3 | 2.74 | 5.11 | 3.13 | 3.52 | 4.88 | 3.34 | 2.15 | 3.27 |
5 | 160894_at | CCAAT/enhancer binding protein delta | 3.29 | 2.95 | 3.96 | 3.37 | 4.49 | 6.98 | 7.42 | 6.15 |
6 | 97844_at | regulator of G-protein signaling 2 | 2.79 | 3.83 | 3.00 | 3.17 | 3.65 | 3.21 | 2.70 | 3.16 |
7 | 160564_at | lipocalin 2 | 3.42 | 2.85 | 3.27 | 3.17 | 8.23 | 9.81 | 7.30 | 8.39 |
8 | 96346_at | cysteine dioxygenase 1, cytosolic | 2.88 | 3.15 | 3.34 | 3.11 | 2.52 | 3.41 | 2.31 | 2.71 |
9 | 160359_at | RIKEN cDNA 1190002H23 | 3.06 | 2.65 | 3.18 | 2.95 | 6.20 | 6.14 | 4.23 | 5.44 |
10 | 92276_at | mitogen-activated protein kinase kinase kinase 6 | 2.75 | 2.89 | 3.14 | 2.92 | 4.27 | 4.95 | 5.42 | 4.86 |
11 | 101030_at | ras homolog gene family, member AB | 2.81 | 2.38 | 3.77 | 2.93 | 4.93 | 5.82 | 5.56 | 5.42 |
12 | 102867_at | TEA domain family member 4 | 2.85 | 2.70 | 3.00 | 2.85 | 4.38 | 5.11 | 4.43 | 4.63 |
13 | 102896_at | downstream of tyrosine kinase 1 | 2.94 | 2.27 | 3.39 | 2.83 | 2.55 | 2.06 | 2.60 | 2.39 |
14 | 93573_at | metallothionein 1 | 2.83 | 2.42 | 2.94 | 2.72 | 3.09 | 3.14 | 3.36 | 3.19 |
15 | 97950_at | xanthine dehydrogenase | 2.11 | 3.89 | 2.24 | 2.64 | 4.64 | 4.82 | 2.49 | 3.82 |
Stratified | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
1 | 160894_at | CCAAT/enhancer binding protein delta | 3.29 | 2.95 | 3.96 | 3.37 | 4.49 | 6.98 | 7.42 | 6.15 |
2 | 102955_at | nuclear factor, interleukin 3 regulated | 2.59 | 2.43 | 3.06 | 2.68 | 4.02 | 3.42 | 3.12 | 3.50 |
3 | 92777_at | cysteine rich protein 61 | 2.44 | 2.20 | 2.65 | 2.42 | 2.74 | 1.77 | 2.55 | 2.31 |
4 | 99027_at | Bcl2-like | 2.21 | 1.56 | 2.49 | 2.05 | 2.62 | 1.85 | 2.19 | 2.20 |
5 | 103644_at | dipeptidase 1 (renal) | 1.89 | 2.04 | 1.87 | 1.93 | 5.09 | 4.49 | 2.63 | 3.92 |
6 | 100952_at | stromal interaction molecule 1 | 1.81 | 1.57 | 1.99 | 1.78 | 2.00 | 1.87 | 1.26 | 1.68 |
7 | 102984_g_at | MAD homolog 1 | 1.56 | 1.68 | 2.07 | 1.75 | 1.23 | 0.95 | 1.15 | 1.11 |
8 | 161228_f_at | enabled homolog | 1.69 | 1.61 | 1.57 | 1.62 | 1.68 | 1.43 | 1.42 | 1.51 |
9 | 103432_at | interferon-stimulated protein | 1.63 | 1.31 | 1.65 | 1.52 | 1.59 | 1.40 | 1.40 | 1.46 |
10 | 96106_at | RIKEN cDNA 2400006P09 | 1.41 | 1.28 | 1.79 | 1.48 | 1.56 | 1.50 | 1.21 | 1.42 |
11 | 100019_at | chondroitin sulfate proteoglycan 2 | 1.32 | 1.65 | 1.37 | 1.44 | 1.61 | 1.58 | 1.04 | 1.38 |
12 | 160924_at | cDNA sequence BC028953 | 1.31 | 1.40 | 1.39 | 1.36 | 1.62 | 2.03 | 1.13 | 1.55 |
13 | 96183_at | forkhead box P1 | 1.34 | 1.28 | 1.31 | 1.31 | 2.06 | 1.68 | 1.52 | 1.74 |
14 | 103890_at | expressed sequence AW538196 | 1.15 | 1.30 | 1.29 | 1.24 | 1.72 | 0.82 | 2.00 | 1.41 |
15 | 104268_at | interleukin 6 receptor, alpha | 1.18 | 1.20 | 1.19 | 1.19 | 2.75 | 2.08 | 1.48 | 2.04 |