Figure 2
From: AMDA: an R package for the automated microarray data analysis
The advanced analysis widgets. Two widgets prompt the necessary information to run a complete analysis. These also allow the tuning of almost all the modifiable parameters of the tools available in the pipeline. Note that, when the auto option is available, there is the possibility to let AMDA decide the most appropriate setting. Basically the two widgets cover the loading and low level analysis of starting data, the selection of differentially expressed genes, their clustering (A), functional evaluation, correspondence analysis and setting of options on writing of gene lists and report files (B).