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Table 6 The 126 genes contributing the most to the ethanol signature as defined by the maximum curvature in Figure 13 A.

From: A novel data mining method to identify assay-specific signatures in functional genomic studies

Gene Name Rank Expression Ratio Gene Name Rank Expression Ratio Gene Name Rank Expression Ratio
yaiD 1 298.3 uidR 43 31.2 yagR 85 5.7
argH 2 170.0 hcaR 44 60.6 mtlA 86 2.3
mngA 3 85.6 yciQ 45 1.4 ydhS 87 2.7
plsC 4 76.9 nagC 46 4.1 ybgH 88 3.7
caiA 5 300.3 yqcD 47 4.3 ygfZ 89 3.5
yebU 6 51.6 ynfA 48 1.8 aat 90 8.7
ylbF 7 29.9 glvC 49 3.2 speD 91 1.7
nrfG 8 46.8 yiaL 50 14.0 yagZ 92 6.2
yaiY 9 27.6 dbpA 51 2.3 yaeQ 93 1.6
pnp 10 4.9 ydhB 52 14.3 uhpT 94 9.4
mepA 11 10.5 grxB 53 2.1 yidF 95 12.1
amtB 12 3.7 hnr 54 4.9 ydiF 96 2.0
xthA 13 22.6 cbl 55 46.8 ydiU 97 2.0
ybfL 14 5.0 hemX 56 2.2 yhaM 98 22.2
moaE 15 2.7 fliG 57 30.3 ycgE 99 8.4
fdrA 16 10.0 yhaJ 58 14.3 ycdJ 100 3.4
topB 17 2.9 ydaP 59 9.3 ydfE 101 3.6
nlpC 18 9.6 tolB 60 2.1 yfcD 102 7.3
yagX 19 2.1 yagB 61 4.8 ytfM 103 2.0
ydcK 20 21.8 livJ 62 1.9 ylbC 104 3.9
yhfR 21 18.3 ybgI 63 2.4 rstA 105 7.3
fliF 22 58.3 tus 64 10.5 ycdI 106 6.5
zipA 23 4.4 uvrY 65 4.9 sfcA 107 7.5
ybhD 24 29.9 yhhX 66 8.2 ynjH 108 1.9
fhuA 25 3.8 sgbU 67 5.7 ybjN 109 11.8
ycfX 26 52.4 ydfP 68 3.2 ynfC 110 2.9
xerC 27 5.7 lysR 69 7.6 yidP 111 29.8
yheH 28 4.4 yneB 70 6.5 ybfO 112 2.1
wzzB 29 4.1 tktB 71 3.2 ydcI 113 34.6
yeeY 30 25.2 yhiP 72 3.1 ybdL 114 3.0
yiaJ 31 18.3 yidL 73 6.8 yggF 115 13.5
uvrC 32 2.2 yfeA 74 8.2 gcvA 116 3.0
ychA 33 16.9 yjcZ 75 3.3 yibN 117 3.6
hyfD 34 2.7 ycbX 76 5.3 cpsB 118 2.4
kdgR 35 3.6 yhcP 77 2.2 nagA 119 3.4
ydfU 36 2.57 recX 78 36.5 mhpB 120 19.8
yfeR 37 46.5 nanR 79 5.5 livK 121 6.9
parC 38 2.5 yccU 80 2.1 mnmE 122 1.7
yhiI 39 12.2 hyuA 81 6.2 fes 123 3.9
ygbI 40 38.1 nadB 82 1.7 pspF 124 3.4
ypdC 41 29.9 yaeJ 83 2.4 ygcP 125 83.3
yeiQ 42 13.5 ybhS 84 3.9 intA 126 2.5
  1. Expression ratios are defined as the average expression level of a gene in the 4 ethanol-challenged cultures divided by the average expression level in the 8 cultures not exposed to ethanol.