From: A novel data mining method to identify assay-specific signatures in functional genomic studies
Functional Group | Gene Name |
---|---|
Known Functions (92, 100%) | |
   Carbon compound catabolism (4/4%) | nagA mhpB; bglA alsE |
   Central intermediary metabolism (6/7%) | tktB speD ylbC sfcA cpsB; tktA |
   Energy metabolism (3/3%) | nrfG hyfD; nrfE |
   Amino acid biosynthesis (3/3%) | argH; leuA trpD |
   Cofactors and prosthetic groups (6/7%) | moaE grxB hemX nadB; gshA |
   Lipid metabolism (1/1%) | plsC |
   Transport (13/14%) | mngA amtB glvC livJ mtlA uhpT livK fes; cvrA feoB nagE kdpB betT |
   Cell processes (10/11%) | fliF zipA xerC fliG tolB; pqiB aidB norV amiA hscC |
   Cell structure (5/5%) | mepA nlpC fhuA ynfA; dsbC |
   Regulatory function (15/16%) | wzzB uidR hcaR nagC hnr cbl lysR rstA gcvA pspF; evgS arcB gppA cyaA lon |
   DNA replication, repair, modification (7/8%) | yaiD xthA topB uvrC parC tus; dnaN |
   Transcription/RNA processing/degradation (4/4%) | pnp dbpA; rne deaD |
   Translation/post-translational modification (12/13%) | aat mnmE; tufA fusA rplO tufB alaS rplD rplX glnS infC rplP |
   Phage, transposon, or plasmid (3/3%) | ydaP intA ylbF |
   Putative Functions (59, 100%) |  |
General (21/36%) | yfeA ycbX ydhS yibN yagX yeiQ yiaL yhhX yneB yccU ycdJ yhiI yciQ yggF ycdI ybdL ybfL; ygjK ynfE yphG ygbE |
Cell processes an energy metabolism (1/2%) | caiA |
Cell structure (1/2%) | yebU |
Central intermediary metabolism (1/2%) | sgbU |
Carbon catabolism (1/2%) | ydiF |
Nucleotide biosynthesis (1/2%) | hyuA |
Transport (7/12%) | fdrA yheH yhiP ybhS ybgH; ybbA yejA |
Regulation (26/44%) | ygfZ yhfR ybhD ycfX yeeY yiaJ kdgR yfeR ygbI ypdC ydhB yhaJ uvrY yidL recX nanR yidF ycgE yfcD ydcI ygcP ybjN yidP; yehI yehU yfiE |
   Hypothetical Functions (26, 100%) | yaiY ydcK ychA ydfU yqcD yagB ybgI ydfP yjcZ yhcP yaeJ yagR yagZ yaeQ ydiU yhaM ydfE ytfM ynjH ynfC ybfO; ybhH ybeQ yqjI yoaD yhgF |