Table 5 Combinations of GO attributes selected for the dataset of Spellman et al. [24]. Starting with the highest scoring attribute 'cytosolicribosome'. new attributes were iteratively included until kmax = 31, the first, 20 are given here. Note that the results do not depend specifically on which of the datasets was used: GO IDs that have been selected among the top 32 for all datasets listed in Table 2 are indicated in bold. The clustering was the same as considered above, see caption of Fig. 2 for details. Note that neither of the attributes is dedicatedly related to the cell cycle, except 'cell cycle' and 'mitosis', which were likewise found for all of the considered datasets.
From: Validation and functional annotation of expression-based clusters based on gene ontology
rank k | GO ID | description |
|---|---|---|
0 | GO:0005830 | cytosolic ribosome (sensu Eukaryota) |
1 | GO:0005737 | cytoplasm |
2 | GO:0007049 | cell cycle |
3 | GO:0005634 | nucleus |
4 | GO:0003824 | catalytic activity |
5 | GO:0006411 | protein metabolism |
6 | GO:0016043 | cell organization and biogenesis |
7 | GO:0008152 | metabolism |
8 | GO:0003676 | nucleic acid binding |
9 | GO:0016020 | membrane |
10 | GO:0007275 | development |
11 | GO:0009058 | biosynthesis |
12 | GO:0008151 | cell growth and/or maintenance |
13 | GO:0005215 | transporter activity |
14 | GO:0005739 | mitochondrion |
15 | GO:0006259 | DNA metabolism |
16 | GO:0009056 | catabolism |
17 | G0:0006519 | amino acid and derivative metabolism |
18 | GO:0005975 | carbohydrate metabolism |
19 | GO:0007067 | mitosis |
20 | GO:0005488 | binding |