Table 1 Quality report. An example of a quality report, generated by the software, when a profile matrix is created.
Experimentid: 1 experimentname : cerebrospinal fluid tryptic peptide profiles to diagnose leptomeningeal metastasis in breast cancer patients Find maxima within distance (Da) : 0.50 Quantile threshold peak finding : 0.98 Combine peaks within distance (Da) : 0.50 Noisy spectra contain peak numbers > : 450 Maximum mass spectra per sample : 4 threshold binary table 0 < 1 > = : 2 |
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Minimum mass (Da) : 800 Maximum mass (Da) : 4000 Calibration : yes ALBMASSES(4) |
number of masses in matrix : 1949 |
group : control group without breast cancer(group1_control) total number of samples : 45 number of samples in matrix : 32 number of samples with too low number of replicates : 12 number of samples not in matrix that because all spectra cannot not be calibrated or are all too noisy : 1 (total number of 6 sample(s) with at least one noisy spectrum) |
group : breast cancer without leptomeningeal metastasis(group2_breast_cancer) total number of samples : 52 number of samples in matrix : 39 number of samples with too low number of replicates : 13 number of samples not in matrix that because all spectra cannot not be calibrated or are all too noisy : 0 (total number of 5 sample(s) with at least one noisy spectrum) |
group : breast cancer with leptomeningeal metastasis(group3_leptomeningeal_metastasis) total number of samples : 54 number of samples in matrix : 40 number of samples with too low number of replicates : 12 number of samples not in matrix that because all spectra cannot not be calibrated or are all too noisy : 2 (total number of 8 sample(s) with at least one noisy spectrum) |