Figure 2

Relative performance of different types of HMMs in assignment of structure to sequence probes, presented as a coverage vs. error plot. SLAHMM-CW refers to models built in the same way as SLAHMMs, but using only sequence information to align the SCOP domains rather than a structural alignment (see text). Iterative parameters used for construction of all models were from PS1 (Table 2). Values for correct assignments are truncated at 600 in order to emphasize differences between the various methods (no method other than SLAHMM-CW had errors below 600 correct assignments).